species:   Pimic
pid:       PID1827
parent:    Pmic_miR-4
paralog:   
locus:     scaffold_5:542437-542560
matures:   ['UAUGGGCUGGCCUAGGCAUGG', 'UGUCAGGGGCCAGCUUUCCUC']
srr:       SRP140503
genome:    /Users/jax/+Genomes/Fungal_genomes/Pimic.Pismi1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140503.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wong-Bajracharya2022-kz.SRP140503.cram scaffold_5:542437-542560

3 out of bounds
74 alignments
60 proper strand
55 stranded perfect matches

                                                                        ***********************      ***********************
GUCAGCAUAUGCCCGACUCCUCACAUGACCACUACCAGUGUAGCUUGGCAACUCCCUGGGGUCAGGUGACUACCUGUCAGGGGCCAGCUUUCCUCUUGGGUGCUAUGGGCUGGCCUAGGCAUGG
(((.((....))..)))...((((.(((((....((((.((.((...)).))...))))))))).))))...((((((..(((((((((((((....)))......)))))))))).)))).))
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=28 c
--------------------------------------------------------------------------UGUCAGGGGCCAGCUUUCCUC----------------------------- l=21 a=0 c*
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=28 ma
--------------------------------------------------------------------------UGUCAGGGGCCAGCUUUCCUC----------------------------- l=21 a=0 ma*

---------------------------------------------------------------------------------------------UCUUGGGUGCUAUGGGCUG------------ l=19 a=1 
------------------------------------------------------------------------------------------------UGGGUGCUAUGGGCUGGCCU-------- l=20 a=1 
----------------------------------------------------------------------------------------------------UGCUAUGGGCUGGCCUAGG----- l=19 a=2 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUG- l=20 a=15 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUa- l=20 a=2 
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGG l=21 a=28 (c,ma)
-------------------------------------------------------------------------------------------------------UAUGGGCUGGCCUAGGCAUGa l=21 a=3 
--------------------------------------------------------------------------------------------------------AUGGGCUGGCCUAGGCAUG- l=19 a=1 
--------------------------------------------------------------------------------------------------------AUGGGCUGGCCUAGGCAUGG l=20 a=3 
---------------------------------------------------------------------------------------------------------UGGGCUGGCCUAGGCAUGG l=19 a=4 

mb-01011
ax-1001011
ku-01
ss-111111101110
fn-111
